# ------------------------------------------------ # CITATION.cff file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # ------------------------------------------------ cff-version: 1.2.0 message: 'To cite package "hilldiv3" in publications use:' type: software license: GPL-3.0-only title: 'hilldiv3: Integral Analysis of Diversity Based on Hill Numbers' version: 3.1.0.9000 doi: 10.32614/CRAN.package.hilldiv3 abstract: Measures and compares the diversity of biological communities (e.g. tables of operational taxonomic units (OTUs), amplicon sequence variants (ASVs) or metagenome-assembled genomes (MAGs)) based on Hill numbers, in a unified framework for neutral, phylogenetic and functional diversity measurement, diversity partitioning, (dis)similarity measurement, diversity profiles, evenness, redundancy and attribution of Hill power-sum weight and beta dissimilarity to taxa and sets. The statistical framework encompasses richness, Shannon and Simpson diversity, Faith's phylogenetic diversity (PD), Rao's quadratic entropy and Sorensen- and UniFrac-type dissimilarities, all grounded in a single Hill-number framework. Methods are described in Jost (2007) , Chao et al. (2010) , Chiu et al. (2014) and reviewed in Alberdi & Gilbert (2019) . Optional import adapters interoperate with the Bioconductor packages 'phyloseq', 'SummarizedExperiment' and 'TreeSummarizedExperiment', which are available from . authors: - family-names: Alberdi given-names: Antton email: antton.alberdi@sund.ku.dk orcid: https://orcid.org/0000-0002-2875-6446 repository: https://alberdilab.r-universe.dev repository-code: https://github.com/alberdilab/hilldiv3 commit: 263360c04c265e3a60aadbcd8c41acaaf6f631ec url: https://alberdilab.github.io/hilldiv3/ date-released: '2026-10-08' contact: - family-names: Alberdi given-names: Antton email: antton.alberdi@sund.ku.dk orcid: https://orcid.org/0000-0002-2875-6446